STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX08795.1Transcriptional regulator, XRE family with cupin sensor; Identified by match to protein family HMM PF01381; match to protein family HMM PF07883. (188 aa)    
Predicted Functional Partners:
EEX09430.1
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
 
 0.757
EEX08797.1
L-threonine 3-dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF08240.
 
     0.635
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
     0.612
EEX08100.1
NAD-dependent deacetylase; Identified by match to protein family HMM PF02146.
  
 
  0.598
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.570
EEX08920.1
Acetyltransferase (Tabtoxin resistance protein); Identified by match to protein family HMM PF00583.
 
  
 0.563
EEX10599.1
Conserved hypothetical protein.
 
 0.544
EEX08794.1
beta-ketoadipyl-CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
       0.538
EEX08388.1
Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583.
    
  0.517
EEX08420.1
Aminotransferase class-III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551; match to protein family HMM PF01636.
  
  
 0.517
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.