Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX09035.1Conserved domain protein; Identified by match to protein family HMM PF06568. (64 aa)    
Predicted Functional Partners:
EEX10454.1
Conserved hypothetical protein.
  
     0.578
EEX08094.1
Conserved hypothetical protein.
  
     0.520
hslV
ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.495
EEX11559.1
ParB domain protein nuclease; Identified by match to protein family HMM PF02195.
  
     0.493
EEX09874.1
Putative lipoprotein.
  
     0.460
EEX10605.1
Conserved hypothetical protein.
  
     0.458
EEX09407.1
Outer membrane porin.
  
     0.452
EEX10270.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07049.
  
     0.418
EEX09552.1
Conserved domain protein; Identified by match to protein family HMM PF06568.
  
   
 0.417
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.400
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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