STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX09680.1Conserved hypothetical protein; Identified by match to protein family HMM PF06080. (217 aa)    
Predicted Functional Partners:
EEX09681.1
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
    
  0.842
EEX09682.1
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248.
       0.784
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.694
EEX09782.1
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183.
      0.663
EEX09679.1
4-carboxymuconolactone decarboxylase domain/ alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.656
EEX09683.1
Conserved hypothetical protein.
       0.535
EEX09684.1
Identified by match to protein family HMM PF00529.
       0.535
EEX09240.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04339.
 
     0.435
EEX08291.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
    
  0.424
EEX08324.1
Dimethylglycine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
    
  0.424
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.