STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX09773.1Identified by match to protein family HMM PF00753. (316 aa)    
Predicted Functional Partners:
EEX09772.1
Monooxygenase FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
 
    0.914
EEX09771.1
Conserved hypothetical protein.
 
     0.901
hmgA
Homogentisate 1,2-dioxygenase; Identified by match to protein family HMM PF04209; match to protein family HMM TIGR01015.
 
     0.891
fahA
Fumarylacetoacetase; Identified by match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266.
 
    0.890
EEX09776.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
     0.829
maiA
Maleylacetoacetate isomerase; Identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262.
 
 
   0.806
EEX11001.1
Conserved hypothetical protein.
  
 0.471
EEX10149.1
Conserved hypothetical protein.
  
 0.469
EEX08927.1
Oxidoreductase, pyridine nucleotide-disulphide family; Identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244.
    
  0.450
EEX10370.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR01372; Belongs to the GcvT family.
  
 
  0.423
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.