STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (720 aa)    
Predicted Functional Partners:
EEX10574.1
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
 
 
 0.978
lptA
Lipopolysaccharide transport periplasmic protein LptA; Identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002.
 
 
 0.975
EEX10572.1
Ppic-type ppiase domain protein; Identified by match to protein family HMM PF00639; match to protein family HMM PF09312.
 
  
 0.959
EEX09878.1
Permease YjgP/YjgQ; Identified by match to protein family HMM PF03739.
 
 
 0.925
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
  
    0.869
EEX10416.1
Conserved hypothetical protein.
  
  
 0.845
EEX09407.1
Outer membrane porin.
  
  
 0.832
EEX10716.1
Putative outer membrane protein.
  
  
 0.825
EEX08695.1
Conserved hypothetical protein.
  
  
 0.824
EEX09106.1
OmpA domain protein; Identified by match to protein family HMM PF00691.
     
 0.822
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.