STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX11005.1AAA_5 ATPase. (144 aa)    
Predicted Functional Partners:
EEX11006.1
ATPase associated with various cellular activities AAA_5.
     0.989
EEX11004.1
VWA containing CoxE family protein; Identified by match to protein family HMM PF05762.
 
     0.933
EEX08732.1
Carbon monoxide dehydrogenase subunit G; Identified by match to protein family HMM PF03364; match to protein family HMM PF06240.
 
     0.764
EEX10997.1
Carbon monoxide dehydrogenase large chain; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
     0.752
EEX10996.1
Carbon monoxide dehydrogenase, medium subunit; Identified by match to protein family HMM PF00941.
 
     0.745
EEX08124.1
Xanthine dehydrogenase family protein, large subunit; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
 
     0.672
EEX10999.1
Molybdopterin biosynthesis protein; Identified by match to protein family HMM PF00994.
 
     0.538
EEX10514.1
VWA containing CoxE family protein.
 
    0.441
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.437
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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