STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX11128.1NMT1/THI5 like domain protein; Identified by match to protein family HMM PF09084. (329 aa)    
Predicted Functional Partners:
EEX11130.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.986
EEX11129.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.979
EEX11132.1
Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.
 
 0.979
hydA
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02033.
 
    0.878
EEX09104.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.875
EEX09103.1
Aliphatic sulfonates import ATP-binding protein SsuB 2; Identified by match to protein family HMM PF00005.
  
 0.789
EEX09145.1
Nitrate ABC transporter, ATPase subunits C and D; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01184.
  
 0.789
EEX09144.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
  
 0.769
EEX08482.1
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
     
  0.752
EEX11134.1
Allantoate amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879.
 
     0.742
Your Current Organism:
Ruegeria lacuscaerulensis
NCBI taxonomy Id: 644107
Other names: R. lacuscaerulensis ITI-1157, Ruegeria lacuscaerulensis DSM 11314, Ruegeria lacuscaerulensis ITI-1157, Silicibacter lacuscaerulensis KCTC 2953
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