Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX11521.1 | EEX11525.1 | SL1157_A0187 | SL1157_A0191 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Nitrite reductase; Identified by match to protein family HMM PF02239. | 0.996 |
EEX11521.1 | EEX11529.1 | SL1157_A0187 | SL1157_A0195 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Cytochrome c55X. | 0.962 |
EEX11521.1 | EEX11530.1 | SL1157_A0187 | SL1157_A0196 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Cytochrome cd1 nitrite reductase; Identified by match to protein family HMM PF02239. | 0.955 |
EEX11521.1 | EEX11531.1 | SL1157_A0187 | SL1157_A0197 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Nitrite reductase heme biosynthesis D protein. | 0.559 |
EEX11521.1 | EEX11532.1 | SL1157_A0187 | SL1157_A0198 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Nitrite reductase heme biosynthesis G protein. | 0.864 |
EEX11521.1 | EEX11533.1 | SL1157_A0187 | SL1157_A0199 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Nitrite reductase heme biosynthesis H protein. | 0.874 |
EEX11521.1 | EEX11534.1 | SL1157_A0187 | SL1157_A0200 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Identified by match to protein family HMM PF02239; match to protein family HMM PF04055. | 0.918 |
EEX11521.1 | EEX11535.1 | SL1157_A0187 | SL1157_A0201 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Conserved hypothetical protein. | 0.519 |
EEX11521.1 | EEX11537.1 | SL1157_A0187 | SL1157_A0203 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Regulatory protein NosR; Identified by match to protein family HMM PF04205. | 0.984 |
EEX11521.1 | nosZ | SL1157_A0187 | SL1157_A0204 | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. | 0.990 |
EEX11525.1 | EEX11521.1 | SL1157_A0191 | SL1157_A0187 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Nitric oxide reductase subunit B; Identified by match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family. | 0.996 |
EEX11525.1 | EEX11529.1 | SL1157_A0191 | SL1157_A0195 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Cytochrome c55X. | 0.985 |
EEX11525.1 | EEX11530.1 | SL1157_A0191 | SL1157_A0196 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Cytochrome cd1 nitrite reductase; Identified by match to protein family HMM PF02239. | 0.948 |
EEX11525.1 | EEX11531.1 | SL1157_A0191 | SL1157_A0197 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Nitrite reductase heme biosynthesis D protein. | 0.866 |
EEX11525.1 | EEX11532.1 | SL1157_A0191 | SL1157_A0198 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Nitrite reductase heme biosynthesis G protein. | 0.960 |
EEX11525.1 | EEX11533.1 | SL1157_A0191 | SL1157_A0199 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Nitrite reductase heme biosynthesis H protein. | 0.960 |
EEX11525.1 | EEX11534.1 | SL1157_A0191 | SL1157_A0200 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Identified by match to protein family HMM PF02239; match to protein family HMM PF04055. | 0.856 |
EEX11525.1 | EEX11535.1 | SL1157_A0191 | SL1157_A0201 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Conserved hypothetical protein. | 0.437 |
EEX11525.1 | EEX11537.1 | SL1157_A0191 | SL1157_A0203 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Regulatory protein NosR; Identified by match to protein family HMM PF04205. | 0.925 |
EEX11525.1 | nosZ | SL1157_A0191 | SL1157_A0204 | Nitrite reductase; Identified by match to protein family HMM PF02239. | Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family. | 0.921 |
page 1 of 6