C4R0L1_KOMPG protein (Komagataella phaffii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C4R0L1_KOMPG

Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM). (209 aa)

Predicted Functional Partners:

C4R257_KOMPG

0.969

C4R4T7_KOMPG

0.969

C4R5P3_KOMPG

0.969

C4R019_KOMPG

0.909

C4R0F0_KOMPG

0.891

C4QYJ0_KOMPG

0.881

C4QZ33_KOMPG

0.839

C4R989_KOMPG

0.833

C4R485_KOMPG

0.785

C4QWH4_KOMPG

0.782

Your Current Organism:

Komagataella phaffii

NCBI taxonomy Id: 644223
Other names: K. phaffii GS115, Komagataella phaffii GS115

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C4QWH4_KOMPG	C4QYJ0_KOMPG	C4QWH4	C4QYJ0	Smg4_UPF3 domain-containing protein.	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	0.961
C4QWH4_KOMPG	C4R019_KOMPG	C4QWH4	C4R019	Smg4_UPF3 domain-containing protein.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.782
C4QWH4_KOMPG	C4R0L1_KOMPG	C4QWH4	C4R0L1	Smg4_UPF3 domain-containing protein.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.782
C4QWH4_KOMPG	C4R257_KOMPG	C4QWH4	C4R257	Smg4_UPF3 domain-containing protein.	Nucleoporin involved in nucleocytoplasmic transport.	0.969
C4QWH4_KOMPG	C4R989_KOMPG	C4QWH4	C4R989	Smg4_UPF3 domain-containing protein.	Nonsense-mediated mRNA decay protein 2.	0.999
C4QYJ0_KOMPG	C4QWH4_KOMPG	C4QYJ0	C4QWH4	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Smg4_UPF3 domain-containing protein.	0.961
C4QYJ0_KOMPG	C4R019_KOMPG	C4QYJ0	C4R019	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.881
C4QYJ0_KOMPG	C4R0L1_KOMPG	C4QYJ0	C4R0L1	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.881
C4QYJ0_KOMPG	C4R257_KOMPG	C4QYJ0	C4R257	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Nucleoporin involved in nucleocytoplasmic transport.	0.975
C4QYJ0_KOMPG	C4R4T7_KOMPG	C4QYJ0	C4R4T7	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Essential component of the nuclear pore complex.	0.971
C4QYJ0_KOMPG	C4R5P3_KOMPG	C4QYJ0	C4R5P3	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Essential component of the nuclear pore complex, which mediates nuclear import and export.	0.971
C4QYJ0_KOMPG	C4R989_KOMPG	C4QYJ0	C4R989	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	Nonsense-mediated mRNA decay protein 2.	0.860
C4QZ33_KOMPG	C4R019_KOMPG	C4QZ33	C4R019	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.839
C4QZ33_KOMPG	C4R0L1_KOMPG	C4QZ33	C4R0L1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.839
C4QZ33_KOMPG	C4R485_KOMPG	C4QZ33	C4R485	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Subunit of cleavage polyadenylation factor (CPF).	0.997
C4R019_KOMPG	C4QWH4_KOMPG	C4R019	C4QWH4	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Smg4_UPF3 domain-containing protein.	0.782
C4R019_KOMPG	C4QYJ0_KOMPG	C4R019	C4QYJ0	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Nucleolar protein required for maturation of 18S rRNA; Belongs to the DEAD box helicase family.	0.881
C4R019_KOMPG	C4QZ33_KOMPG	C4R019	C4QZ33	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.839
C4R019_KOMPG	C4R0F0_KOMPG	C4R019	C4R0F0	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	E3 ubiquitin-protein ligase.	0.412
C4R019_KOMPG	C4R0L1_KOMPG	C4R019	C4R0L1	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	Cytoplasmic RNA-binding protein, contains an RNA recognition motif (RRM).	0.909