C4R5K1_KOMPG protein (Komagataella phaffii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C4R5K1_KOMPG

Nucleolar protein, component of the small subunit (SSU) processome. (793 aa)

Predicted Functional Partners:

C4QVT4_KOMPG

0.999

C4QWE2_KOMPG

0.999

C4R055_KOMPG

0.999

C4R126_KOMPG

0.999

C4R169_KOMPG

0.999

C4R1R4_KOMPG

0.999

C4R315_KOMPG

0.999

C4R925_KOMPG

0.999

C4QWC1_KOMPG

0.998

C4QZ27_KOMPG

0.998

Your Current Organism:

Komagataella phaffii

NCBI taxonomy Id: 644223
Other names: K. phaffii GS115, Komagataella phaffii GS115

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C4QVT4_KOMPG	C4QWC1_KOMPG	C4QVT4	C4QWC1	U3 small nucleolar RNA-associated protein.	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	0.999
C4QVT4_KOMPG	C4QWE2_KOMPG	C4QVT4	C4QWE2	U3 small nucleolar RNA-associated protein.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999
C4QVT4_KOMPG	C4QZ27_KOMPG	C4QVT4	C4QZ27	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein.	0.999
C4QVT4_KOMPG	C4R055_KOMPG	C4QVT4	C4R055	U3 small nucleolar RNA-associated protein.	Periodic tryptophan protein 2.	0.999
C4QVT4_KOMPG	C4R126_KOMPG	C4QVT4	C4R126	U3 small nucleolar RNA-associated protein.	Uncharacterized protein.	0.999
C4QVT4_KOMPG	C4R169_KOMPG	C4QVT4	C4R169	U3 small nucleolar RNA-associated protein.	Nucleolar protein, specifically associated with the U3 snoRNA.	0.999
C4QVT4_KOMPG	C4R1R4_KOMPG	C4QVT4	C4R1R4	U3 small nucleolar RNA-associated protein.	Nucleolar protein, component of the small subunit (SSU) processome.	0.999
C4QVT4_KOMPG	C4R315_KOMPG	C4QVT4	C4R315	U3 small nucleolar RNA-associated protein.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999
C4QVT4_KOMPG	C4R5K1_KOMPG	C4QVT4	C4R5K1	U3 small nucleolar RNA-associated protein.	Nucleolar protein, component of the small subunit (SSU) processome.	0.999
C4QVT4_KOMPG	C4R925_KOMPG	C4QVT4	C4R925	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein 22.	0.999
C4QWC1_KOMPG	C4QVT4_KOMPG	C4QWC1	C4QVT4	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	U3 small nucleolar RNA-associated protein.	0.999
C4QWC1_KOMPG	C4QWE2_KOMPG	C4QWC1	C4QWE2	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999
C4QWC1_KOMPG	C4QZ27_KOMPG	C4QWC1	C4QZ27	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	U3 small nucleolar RNA-associated protein.	0.998
C4QWC1_KOMPG	C4R055_KOMPG	C4QWC1	C4R055	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Periodic tryptophan protein 2.	0.998
C4QWC1_KOMPG	C4R126_KOMPG	C4QWC1	C4R126	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Uncharacterized protein.	0.998
C4QWC1_KOMPG	C4R169_KOMPG	C4QWC1	C4R169	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Nucleolar protein, specifically associated with the U3 snoRNA.	0.999
C4QWC1_KOMPG	C4R1R4_KOMPG	C4QWC1	C4R1R4	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Nucleolar protein, component of the small subunit (SSU) processome.	0.997
C4QWC1_KOMPG	C4R315_KOMPG	C4QWC1	C4R315	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999
C4QWC1_KOMPG	C4R5K1_KOMPG	C4QWC1	C4R5K1	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	Nucleolar protein, component of the small subunit (SSU) processome.	0.998
C4QWC1_KOMPG	C4R925_KOMPG	C4QWC1	C4R925	Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits.	U3 small nucleolar RNA-associated protein 22.	0.998