C4R6A4_KOMPG protein (Komagataella phaffii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C4R6A4_KOMPG

Uncharacterized protein. (641 aa)

Predicted Functional Partners:

C4R5E1_KOMPG

0.616

C4R2G8_KOMPG

0.543

C4R152_KOMPG

0.523

C4R2L6_KOMPG

0.513

C4R615_KOMPG

0.510

C4QWE2_KOMPG

0.476

C4QVT4_KOMPG

0.470

C4R055_KOMPG

0.469

C4QZN4_KOMPG

0.468

UTP25

0.457

Your Current Organism:

Komagataella phaffii

NCBI taxonomy Id: 644223
Other names: K. phaffii GS115, Komagataella phaffii GS115

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C4QVT4_KOMPG	C4QWE2_KOMPG	C4QVT4	C4QWE2	U3 small nucleolar RNA-associated protein.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999
C4QVT4_KOMPG	C4QZN4_KOMPG	C4QVT4	C4QZN4	U3 small nucleolar RNA-associated protein.	Shuttling pre-60S factor.	0.614
C4QVT4_KOMPG	C4R055_KOMPG	C4QVT4	C4R055	U3 small nucleolar RNA-associated protein.	Periodic tryptophan protein 2.	0.999
C4QVT4_KOMPG	C4R5E1_KOMPG	C4QVT4	C4R5E1	U3 small nucleolar RNA-associated protein.	ATP binding cassette family member.	0.999
C4QVT4_KOMPG	C4R6A4_KOMPG	C4QVT4	C4R6A4	U3 small nucleolar RNA-associated protein.	Uncharacterized protein.	0.470
C4QVT4_KOMPG	UTP25	C4QVT4	C4R2K0	U3 small nucleolar RNA-associated protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.988
C4QWE2_KOMPG	C4QVT4_KOMPG	C4QWE2	C4QVT4	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	U3 small nucleolar RNA-associated protein.	0.999
C4QWE2_KOMPG	C4QZN4_KOMPG	C4QWE2	C4QZN4	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	Shuttling pre-60S factor.	0.615
C4QWE2_KOMPG	C4R055_KOMPG	C4QWE2	C4R055	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	Periodic tryptophan protein 2.	0.999
C4QWE2_KOMPG	C4R5E1_KOMPG	C4QWE2	C4R5E1	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	ATP binding cassette family member.	0.999
C4QWE2_KOMPG	C4R6A4_KOMPG	C4QWE2	C4R6A4	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	Uncharacterized protein.	0.476
C4QWE2_KOMPG	UTP25	C4QWE2	C4R2K0	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.860
C4QZN4_KOMPG	C4QVT4_KOMPG	C4QZN4	C4QVT4	Shuttling pre-60S factor.	U3 small nucleolar RNA-associated protein.	0.614
C4QZN4_KOMPG	C4QWE2_KOMPG	C4QZN4	C4QWE2	Shuttling pre-60S factor.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.615
C4QZN4_KOMPG	C4R055_KOMPG	C4QZN4	C4R055	Shuttling pre-60S factor.	Periodic tryptophan protein 2.	0.732
C4QZN4_KOMPG	C4R5E1_KOMPG	C4QZN4	C4R5E1	Shuttling pre-60S factor.	ATP binding cassette family member.	0.518
C4QZN4_KOMPG	C4R6A4_KOMPG	C4QZN4	C4R6A4	Shuttling pre-60S factor.	Uncharacterized protein.	0.468
C4QZN4_KOMPG	UTP25	C4QZN4	C4R2K0	Shuttling pre-60S factor.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.465
C4R055_KOMPG	C4QVT4_KOMPG	C4R055	C4QVT4	Periodic tryptophan protein 2.	U3 small nucleolar RNA-associated protein.	0.999
C4R055_KOMPG	C4QWE2_KOMPG	C4R055	C4QWE2	Periodic tryptophan protein 2.	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA.	0.999