STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC68824.1KEGG: mja:MJ0149 hypothetical protein. (58 aa)    
Predicted Functional Partners:
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
       0.940
ADC68826.1
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cby:CLM_1793 2-hydroxyglutaryl-CoA dehydratase, D-component.
       0.618
ADC68827.1
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: tdn:Suden_0272 CoA enzyme activase.
       0.618
ADC68828.1
PFAM: GCN5-related N-acetyltransferase; KEGG: pmi:PMT9312_1100 SSU ribosomal protein S18P alanine acetyltransferase.
       0.618
ADC68829.1
KEGG: cma:Cmaq_1724 hypothetical protein.
       0.618
ADC68830.1
Hypothetical protein.
       0.618
ADC68831.1
KEGG: hypothetical protein.
       0.593
ADC68832.1
KEGG: Viral A-type inclusion protein repeat.
       0.593
ADC68833.1
KEGG: hypothetical protein.
       0.593
ADC68834.1
PFAM: protein of unknown function DUF87; KEGG: mac:MA0204 hypothetical protein.
       0.593
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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