STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC68842.1PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ1620 hypothetical protein. (500 aa)    
Predicted Functional Partners:
ADC68841.1
TIGRFAM: siroheme synthase; KEGG: mja:MJ0140 hypothetical protein.
     
 0.874
ADC68840.1
PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ0141 hypothetical protein.
       0.784
ADC70106.1
PFAM: 4-vinyl reductase 4VR; KEGG: mvu:Metvu_0444 4-vinyl reductase 4VR.
 
  
 0.713
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
   
 0.698
ADC68823.1
PFAM: 4-vinyl reductase 4VR; KEGG: mja:MJ0150 hypothetical protein.
 
  
 0.687
ADC70129.1
PFAM: 4-vinyl reductase 4VR; KEGG: mja:MJ0716m hypothetical protein.
 
  
 0.669
ADC68843.1
biotin/acetyl-CoA-carboxylase ligase; KEGG: mja:MJ1619 biotin operon repressor/biotin--[acetyl-CoA-carboxylase] ligase (BirA); TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein.
  
    0.592
ADC69571.1
PFAM: 4-vinyl reductase 4VR; KEGG: mja:MJ1460 hypothetical protein.
  
  
 0.588
ADC69983.1
PFAM: 4-vinyl reductase 4VR; KEGG: mja:MJ0855 hypothetical protein.
  
  
 0.588
ADC68844.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mja:MJ1618 hypothetical protein.
       0.498
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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