STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC69205.1UDP-N-acetylglucosamine 2-epimerase; KEGG: mja:MJ1504 lipopolysaccharide biosynthesis protein (WbpI); TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase. (370 aa)    
Predicted Functional Partners:
ADC70366.1
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: mja:MJ0428 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 0.999
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.905
ADC69706.1
KEGG: mae:Maeo_1069 hypothetical protein.
      
 0.891
ADC69204.1
PFAM: transcriptional regulator TrmB; KEGG: mja:MJ1503 hypothetical protein.
       0.808
ADC69206.1
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; ERCC4 domain protein; helix-hairpin-helix motif; SMART: DEAD-like helicase; helicase domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: mja:MJ1505 Hef nuclease.
       0.777
ADC68753.1
PFAM: Glycosyl transferase, family 4, conserved region; KEGG: mja:MJ1113 N-acetylglucosamine-1-phosphate transferase.
  
  
 0.704
ADC69098.1
PFAM: polysaccharide biosynthesis protein; KEGG: mvu:Metvu_0060 polysaccharide biosynthesis protein.
  
  
 0.676
ADC69245.1
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: mja:MJ1375 SpoVB isolog.
  
  
 0.676
ADC69293.1
PFAM: polysaccharide biosynthesis protein; KEGG: mvu:Metvu_0404 polysaccharide biosynthesis protein.
  
  
 0.676
ADC69202.1
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: mja:MJ1501 hypothetical protein.
       0.644
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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