STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmYProtein of unknown function DUF358; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (202 aa)    
Predicted Functional Partners:
pus10
THUMP domain protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.939
nep1
Suppressor Mra1 family protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.
     
 0.896
ADC69655.1
TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mja:MJ1476 hypothetical protein.
     
 0.805
ADC69323.1
PFAM: PhoU family protein; KEGG: mfe:Mefer_1330 phosphate uptake regulator, PhoU.
       0.798
ADC69325.1
PFAM: Queuosine synthesis-like; KEGG: mja:MJ1638 hypothetical protein.
       0.778
ADC69934.1
PFAM: Type II secretion system F domain; KEGG: mja:MJ0901 flagellar assembly protein J.
 
    0.693
ADC69942.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
    0.659
ADC69943.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella.
 
    0.654
ADC69940.1
PFAM: flagella protein; KEGG: mja:MJ0895 flagella-related protein D, putative.
  
    0.626
ADC69935.1
PFAM: type II secretion system protein E; KEGG: mja:MJ0900 type II secretion system protein.
 
    0.608
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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