STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC69366.1Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: mja:MJ1254 hypothetical protein. (437 aa)    
Predicted Functional Partners:
ADC69363.1
PFAM: THUMP domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mja:MJ1257 hypothetical protein.
 
     0.888
secF
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
     0.797
ADC69365.1
PFAM: Glycosyltransferase 28 domain; KEGG: mja:MJ1255 hypothetical protein.
 
    0.767
cofD
LPPG domain protein containing protein; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.
  
    0.726
ADC69649.1
PFAM: Protein of unknown function DUF2341; KEGG: mja:MJ1470 hypothetical protein.
  
     0.705
ADC70100.1
PFAM: putative cell wall binding repeat 2-containing protein; KEGG: mja:MJ0755 N-acetylmuramoyl-L-alanine amidase.
 
     0.671
ADC68950.1
PFAM: legume lectin beta domain; KEGG: mja:MJ1396 hypothetical protein.
  
     0.638
ADC70078.1
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; ATPase; SMART: regulatory protein ArsR; AAA ATPase; KEGG: mja:MJ0774 hypothetical protein.
 
     0.631
ADC70073.1
PFAM: Type II secretion system F domain; KEGG: mja:MJ0779 hypothetical protein.
  
     0.629
ADC68894.1
KEGG: mfe:Mefer_0657 hypothetical protein.
  
     0.616
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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