STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC70033.1PFAM: protein of unknown function DUF366; KEGG: mja:MJ0805 hypothetical protein. (204 aa)    
Predicted Functional Partners:
ADC70035.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ0804 pyruvate formate-lyase activating enzyme (act).
       0.766
ADC69200.1
PFAM: protein of unknown function DUF192; KEGG: mja:MJ1496 hypothetical protein.
  
     0.524
ADC68826.1
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cby:CLM_1793 2-hydroxyglutaryl-CoA dehydratase, D-component.
  
     0.513
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
     0.493
ADC70036.1
TIGRFAM: methanogenesis marker protein 17; PFAM: Uncharacterised conserved protein UCP019464, methanogenesis; KEGG: mja:MJ0802 hypothetical protein.
 
     0.466
ADC69109.1
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; ferredoxin; KEGG: mja:MJ0092 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
       0.461
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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