STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgtAArchaeosine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family. (657 aa)    
Predicted Functional Partners:
ADC70241.1
TIGRFAM: acetyl coenzyme A synthetase (ADP forming), alpha domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: mja:MJ0590 hypothetical protein.
   
   0.820
ADC70373.1
PFAM: AIG2 family protein; KEGG: mja:MJ0434 hypothetical protein.
       0.798
ADC70375.1
KEGG: mja:MJ0437 hypothetical protein.
 
     0.783
ADC70376.1
PFAM: putative RNA methylase; THUMP domain protein; KEGG: mja:MJ0438 hypothetical protein.
  
  
 0.783
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
  
  
 0.775
ADC69682.1
tRNA (adenine-N(1)-)-methyltransferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: mja:MJ0134 L-isoaspartyl protein carboxyl methyltransferase isolog (PimT).
  
  
 0.770
ADC70372.1
KEGG: mja:MJ0433 hypothetical protein.
       0.746
nac
alpha-NAC related protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
 
     0.735
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
 
   
 0.718
ADC69722.1
PFAM: phosphate transporter; KEGG: mja:MJ0630 putative phosphate permease.
  
    0.713
Your Current Organism:
Methanocaldococcus sp. FS40622
NCBI taxonomy Id: 644281
Other names: M. sp. FS406-22, Methanocaldococcus sp. FS406-22
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