STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Deba_0007COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: dal:Dalk_2166 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: B8FF42 Response regulator receiver protein; PFAM: Response regulator receiver domain. (121 aa)    
Predicted Functional Partners:
Deba_0006
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003661:IPR003594:IPR005467:IPR 009082:IPR004358; KEGG: dal:Dalk_2165 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8FF41 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
 
 
 0.913
Deba_3291
COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR000014:IPR003594:IPR009082:IPR003018:IPR 013656:IPR003661:IPR005467:IPR004358; KEGG: cau:Caur_1383 PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; SPTR: A9W9X5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF do [...]
 
 
 0.864
Deba_0030
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR009082:IPR004358; KEGG: cag:Cagg_2683 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: B8G4S5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS [...]
 
 
 
 0.798
Deba_0066
COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterProIPR003018:IPR003594:IPR005467:IPR009082:IPR 004358; KEGG: sfu:Sfum_0281 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; SPTR: Q2YZR5 Sensor protein; PFAM: GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.798
Deba_0597
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR013105:IPR011717:IPR001440:IPR 011006:IPR019734:IPR011990:IPR013026:IPR005829; KEGG: hch:HCH_04305 FOG: CheY-like receiver; PFAM: response regulator receiver; Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat; SPTR: A6F3F5 CheY-like receiver protein; PFAM: Response regulator receiver domain; Tetratricopeptide repeat.
 
 
 0.796
Deba_1539
COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterProIPR003661:IPR003594:IPR009082:IPR004358:IPR 005467; KEGG: dba:Dbac_1016 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: C4T0M4 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
 
 0.792
Deba_2638
COGs: COG5002 Signal transduction histidine kinase; InterProIPR000014:IPR003661:IPR003594:IPR009082:IPR 013656:IPR004358:IPR005467; KEGG: sth:STH749 two-component sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: Q67RF9 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain [...]
  
 
   0.784
Deba_1066
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR018480; KEGG: sfu:Sfum_0707 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: A0LG53 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
  
   0.777
Deba_3210
COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR003594:IPR009082:IPR013767:IPR 003661:IPR005467:IPR004358; KEGG: dma:DMR_23810 putative sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; SPTR: C4XT75 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS [...]
 
 
 
 0.776
Deba_1490
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013656:IPR003661:IPR003594:IPR005467:IPR 000014:IPR000700:IPR004358:IPR001610:IPR009082; KEGG: dma:DMR_41550 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; SPTR: C4XPU6 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phos [...]
 
 
 
 0.773
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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