STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0016COGs: COG2406 Protein distantly related to ferritins; InterProIPR008331:IPR009040:IPR009078:IPR012347:IPR 014490; KEGG: mhu:Mhun_0131 ferritin and Dps; PFAM: Ferritin Dps family protein; SPTR: Q2FMS4 Ferritin and Dps; PFAM: Ferritin-like domain. (167 aa)    
Predicted Functional Partners:
Deba_0017
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: dol:Dole_3001 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ31 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
       0.479
Deba_2634
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR017900:IPR001450:IPR017896; KEGG: dol:Dole_2297 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A8ZV11 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
    0.472
Deba_0018
KEGG: bba:Bd1662 hypothetical protein; SPTR: A3ZNI2 Putative uncharacterized protein.
       0.424
Deba_2487
COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: mac:MA2698 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: Q8TMG0 Putative uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
   
    0.402
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.