STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Deba_0068Metallo-beta-lactamase family protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: chy:CHY_0600 metallo-beta-lactamase family protein; SPTR: Q3AEH8 Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily. (274 aa)    
Predicted Functional Partners:
Deba_0965
COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02143 Zn-dependent hydrolases; SPTR: Q2LSA2 Zn-dependent hydrolases; PFAM: Metallo-beta-lactamase superfamily.
  
  
  0.922
Deba_0428
COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02851 Zn-dependent hydrolase; SPTR: Q2LSY9 Zn-dependent hydrolase including glyoxylases; PFAM: Metallo-beta-lactamase superfamily.
  
  
  0.917
Deba_3293
Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_3118 beta-lactamase domain protein; SPTR: B8FBQ5 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
  
  
  0.916
Deba_3106
Beta-lactamase domain-containing protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sfu:Sfum_1732 beta-lactamase domain-containing protein; SPTR: Q1NSR0 Beta-lactamase-like; PFAM: Metallo-beta-lactamase superfamily.
  
  
  0.915
Deba_0067
Redoxin domain protein; InterPro IPR013740:IPR017936:IPR012336:IPR012335; KEGG: afe:Lferr_0206 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: C6MAN3 Thioredoxin family protein; PFAM: Redoxin.
   
 
 0.592
Deba_0139
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR013027:IPR004099:IPR001763:IPR016156; KEGG: hor:Hore_02400 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; SPTR: B8D132 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisatio [...]
  
 0.547
Deba_2200
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR016156:IPR001763:IPR013027:IPR004099; KEGG: dps:DP0550 NADH oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; SPTR: Q6AQU4 Related to NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain.
  
 0.547
Deba_0069
InterPro IPR011990; KEGG: sfu:Sfum_0584 hypothetical protein; SPTR: A0LFT1 Putative uncharacterized protein.
       0.505
Deba_1793
Peptidase M15A; InterPro IPR009045:IPR013230; KEGG: dde:Dde_1882 hypothetical protein; PFAM: Peptidase M15A; SPTR: Q310G7 Putative uncharacterized protein; PFAM: Peptidase M15.
  
    0.500
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
   0.443
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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