STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0071Rubrerythrin; COGs: COG1592 Rubrerythrin; InterProIPR003251:IPR004039:IPR009040:IPR009078:IPR 012347; KEGG: dol:Dole_2183 rubrerythrin; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: A8ZUF5 Rubrerythrin; PFAM: Rubrerythrin. (203 aa)    
Predicted Functional Partners:
Deba_0070
Hypothetical protein; InterPro IPR017896:IPR017900; KEGG: sfu:Sfum_3217 hypothetical protein; SPTR: A0LN88 Putative uncharacterized protein.
       0.781
Deba_0069
InterPro IPR011990; KEGG: sfu:Sfum_0584 hypothetical protein; SPTR: A0LFT1 Putative uncharacterized protein.
       0.556
Deba_0582
Rubrerythrin; InterPro IPR003251:IPR009078:IPR012347; KEGG: dal:Dalk_3005 rubrerythrin; PFAM: Rubrerythrin; SPTR: B8FL60 Rubrerythrin; PFAM: Rubrerythrin.
  
  
 0.424
fur-2
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: drt:Dret_0141 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C8R2S3 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
 
  
 0.419
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.