STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0095Glutaredoxin; COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109:IPR012336:IPR012335; KEGG: dol:Dole_2968 glutaredoxin; PFAM: glutaredoxin; SPTR: A8ZYZ8 Glutaredoxin; PFAM: Glutaredoxin. (84 aa)    
Predicted Functional Partners:
Deba_0094
Conserved hypothetical protein; COGs: COG4802 Ferredoxin-thioredoxin reductase catalytic subunit; InterPro IPR004209; KEGG: dol:Dole_2967 hypothetical protein; SPTR: A8ZYZ7 Putative uncharacterized protein; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain.
 
   
 0.957
Deba_2759
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.956
Deba_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.609
Deba_2825
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR010462:IPR014710:IPR011051; KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C0GMJ0 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
  
     0.509
rsmI
Phosphocarrier, HPr family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.500
Deba_2129
HesB/YadR/YfhF-family protein; InterPro IPR000361; KEGG: dal:Dalk_4032 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: B8FLY4 Putative uncharacterized protein; PFAM: Iron-sulphur cluster biosynthesis.
  
  
 0.490
Deba_2810
InterPro IPR000361; KEGG: dps:DP0988 hypothetical protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: Q6APK7 Putative uncharacterized protein; PFAM: Iron-sulphur cluster biosynthesis.
  
  
 0.490
Deba_2811
HesB/YadR/YfhF-family protein; Contains Selenocysteine; InterPro IPR000361; KEGG: dsa:Desal_0629 HesB/YadR/YfhF-family protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: C6BYA4 HesB/YadR/YfhF-family protein; manually curated; PFAM: Iron-sulphur cluster biosynthesis.
  
  
 0.490
Deba_0692
COGs: COG0069 Glutamate synthase domain 2; InterPro IPR013785:IPR002932; KEGG: ate:Athe_2034 ferredoxin-dependent glutamate synthase; PFAM: ferredoxin-dependent glutamate synthase; SPTR: B9MLC1 Ferredoxin-dependent glutamate synthase; PFAM: Conserved region in glutamate synthase.
 
     0.487
Deba_0096
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060:IPR009057:IPR018062; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein.
       0.475
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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