STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Deba_0099TonB-dependent siderophore receptor; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010105; KEGG: rru:Rru_A0865 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor. (686 aa)    
Predicted Functional Partners:
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.875
Deba_2431
TonB family protein; InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, putative; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain.
  
 
 0.779
Deba_0097
Major facilitator superfamily MFS_1; InterPro IPR011701:IPR016196; KEGG: mxa:MXAN_5357 RhtX/FptX family siderophore transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Q1D1G6 Siderophore transporter, RhtX/FptX family; PFAM: Major Facilitator Superfamily.
 
   
 0.753
Deba_2294
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dal:Dalk_3527 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: B8FC10 Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
  
 0.649
Deba_0474
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain.
 
  
 0.629
Deba_0547
KEGG: dde:Dde_0490 hypothetical protein; SPTR: Q315V5 Putative uncharacterized protein.
  
     0.628
Deba_2296
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family.
 
  
 0.627
Deba_0127
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
  
0.590
Deba_1198
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531:IPR018181; KEGG: dat:HRM2_08940 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0QKD6 TonB-dependent outer-membrane uptake protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
  
0.589
Deba_1125
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR020449:IPR009057:IPR000005:IPR018060; KEGG: dsa:Desal_2087 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: C6BVU4 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
   
 0.588
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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