STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0110Hypothetical protein. (79 aa)    
Predicted Functional Partners:
Deba_0109
DNA binding domain protein, excisionase family; InterPro IPR009061:IPR010093; KEGG: pla:Plav_1818 hypothetical protein; SPTR: A7HU52 Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
       0.773
Deba_0111
Hypothetical protein; KEGG: eic:NT01EI_1130 outer membrane usher protein FimD, putative; SPTR: B8A6Z1 Putative uncharacterized protein.
       0.486
Deba_0112
KEGG: dol:Dole_2951 hypothetical protein; SPTR: A8ZYY1 Putative uncharacterized protein.
       0.426
Deba_0113
KEGG: ank:AnaeK_1667 protein of unknown function DUF323; SPTR: B4ULN8 Putative uncharacterized protein.
       0.426
Deba_0114
KEGG: sen:SACE_2979 hypothetical protein; SPTR: A4FDY2 Putative uncharacterized protein.
       0.426
Deba_0108
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104:IPR011010:IPR013762; KEGG: pde:Pden_3122 phage integrase family protein; PFAM: integrase family protein; SPTR: B6BEF5 Phage integrase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.421
Deba_0115
KEGG: rce:RC1_0507 SMC family protein; SPTR: B6IR58 SMC family protein.
       0.403
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.