STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_0126InterPro IPR000883; KEGG: pca:Pcar_0850 hypothetical protein; SPTR: Q3A6A1 Putative uncharacterized protein; PFAM: Cytochrome C and Quinol oxidase polypeptide I. (197 aa)    
Predicted Functional Partners:
Deba_1754
Cytochrome b/b6 domain protein; COGs: COG1290 Cytochrome b subunit of the bc complex; InterPro IPR016174:IPR005797:IPR016175; KEGG: sth:STH3148 menaquinol-cytochrome c reductase; PFAM: Cytochrome b/b6 domain; SPTR: Q67JM0 Menaquinol-cytochrome C reductase; PFAM: Cytochrome b(N-terminal)/b6/petB.
  
 
 0.894
Deba_1755
Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805:IPR017909; KEGG: sth:STH3146 plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Q67JM2 Plastoquinol--plastocyanin reductase; PFAM: Rieske [2Fe-2S] domain.
  
 
 0.889
Deba_2117
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0348 Polyferredoxin; InterPro IPR017896:IPR017900:IPR001450; KEGG: dvm:DvMF_2713 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C0GLH2 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: MauM/NapG family ferredoxin-type protein.
  
 
 0.870
Deba_2218
InterPro IPR011031; KEGG: dol:Dole_2546 hypothetical protein; SPTR: A8ZWL9 Putative uncharacterized protein; PFAM: Class III cytochrome C family.
  
 
 0.866
Deba_0127
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
       0.781
Deba_1129
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.691
Deba_0784
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: dal:Dalk_2272 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: B8FIH5 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
   
 
 0.681
Deba_1526
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR012336:IPR002023:IPR012335; KEGG: dat:HRM2_16590 NuoE; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C0QAI2 NuoE; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
   
 
 0.681
Deba_2838
COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023:IPR012335:IPR012336; KEGG: adg:Adeg_0158 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: C9RAQ3 NADH dehydrogenase (Ubiquinone) 24 kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
   
 
 0.681
Deba_0487
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR019575:IPR013027:IPR009051:IPR012285:IPR 016040:IPR000759:IPR001949; KEGG: dds:Ddes_1543 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SPTR: B8J118 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-u [...]
  
 
 0.671
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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