STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Deba_0127COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q3A699 TonB-dependent outer membrane receptor for Fe3+/colicin I; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (641 aa)    
Predicted Functional Partners:
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.886
Deba_0126
InterPro IPR000883; KEGG: pca:Pcar_0850 hypothetical protein; SPTR: Q3A6A1 Putative uncharacterized protein; PFAM: Cytochrome C and Quinol oxidase polypeptide I.
       0.781
Deba_2431
TonB family protein; InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, putative; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain.
  
 
 0.757
Deba_1635
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dat:HRM2_47540 outer membrane receptor protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C0QHE4 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
   
 0.727
Deba_0474
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain.
 
   
 0.676
Deba_1543
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dac:Daci_3112 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A9BU35 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
   
 0.610
Deba_1773
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
   
 0.590
Deba_3096
Hypothetical protein; KEGG: phe:Phep_2408 heparinase II/III family protein; SPTR: B0NLH9 Putative uncharacterized protein.
  
     0.576
Deba_0125
Hypothetical protein; KEGG: tau:Tola_1087 PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: C4LDB7 PpiC-type peptidyl-prolyl cis-trans isomerase.
  
  
 0.575
Deba_2296
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family.
 
  
 0.566
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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