Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_0135Transcriptional regulator, TetR family; InterPro IPR001647:IPR011075:IPR009057:IPR015893; KEGG: nca:Noca_4300 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A1SPR2 Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region. (191 aa)    
Predicted Functional Partners:
Deba_0134
UspA domain protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: dma:DMR_39250 putative universal stress protein; PFAM: UspA domain protein; SPTR: C4XNB3 Putative universal stress protein; PFAM: Universal stress protein family.
  
  
 0.784
Deba_1704
Transcriptional regulator, TetR family; InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_2467 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFA0 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.608
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
 
 
 0.582
Deba_1863
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR017441:IPR006176:IPR006108:IPR001753:IPR 016040:IPR008927:IPR013328; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; SPTR: Q3ABP7 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
  
 0.562
Deba_1183
Hypothetical protein; KEGG: hmo:HM1_2365 acetoin utilization protein, subunit A; SPTR: B0TIH4 Acetoin utilization protein, subunit a.
  
    0.556
Deba_0136
KEGG: dal:Dalk_2308 cache, type 2 domain protein; SPTR: B8FIL1 Cache, type 2 domain protein.
 
     0.555
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.428
Deba_3028
KEGG: dat:HRM2_34640 hypothetical protein; SPTR: C0Q934 Putative uncharacterized protein.
  
     0.420
Deba_2303
Putative methyl-accepting chemotaxis sensory transducer; InterPro IPR003660; KEGG: dal:Dalk_2462 protein serine/threonine phosphatase; PFAM: histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; SPTR: B8FF95 Protein serine/threonine phosphatase; PFAM: HAMP domain.
  
     0.412
Deba_3193
Transcriptional regulator, TetR family; InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dal:Dalk_1849 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: B8FFZ1 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.404
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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