STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0144Hypothetical protein; KEGG: bpm:BURPS1710b_3218 AraC family transcriptional regulator; SPTR: Q3JPB4 Transcriptional regulator, AraC family. (106 aa)    
Predicted Functional Partners:
Deba_0145
KEGG: mno:Mnod_6660 hypothetical protein; SPTR: B8IRN9 Putative uncharacterized protein.
       0.773
Deba_0146
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: rmr:Rmar_1316 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: D0MI98 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
       0.557
Deba_0147
COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR001926; KEGG: dal:Dalk_2543 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; SPTR: B8FFH6 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-phosphate dependent enzyme.
       0.557
Deba_0143
Arginine decarboxylase, pyruvoyl-dependent; COGs: COG1945 conserved hypothetical protein; InterPro IPR002724:IPR016104; KEGG: aba:Acid345_1944 pyruvoyl-dependent arginine decarboxylase; PFAM: Pyruvoyl-dependent arginine decarboxylase; PRIAM: Arginine decarboxylase; SPTR: Q1IQA5 Arginine decarboxylase; TIGRFAM: arginine decarboxylase, pyruvoyl-dependent; PFAM: Pyruvoyl-dependent arginine decarboxylase (PvlArgDC); TIGRFAM: arginine decarboxylase, pyruvoyl-dependent.
       0.479
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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