STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0190Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ppd:Ppro_1468 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: A1AP14 Methyltransferase type 11; PFAM: Methyltransferase domain. (210 aa)    
Predicted Functional Partners:
Deba_0187
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sfu:Sfum_3702 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A0LPM0 Periplasmic binding protein; PFAM: Periplasmic binding protein.
 
 
   0.836
Deba_0189
Radical SAM domain protein; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ppd:Ppro_1469 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: A1AP15 Radical SAM domain protein; PFAM: Periplasmic binding protein; Radical SAM superfamily.
   
   0.812
Deba_0188
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1470 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1AP16 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: outer membrane autotransporter barrel domain.
 
     0.798
Deba_0185
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: sfu:Sfum_3704 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A0LPM2 ABC transporter related; PFAM: ABC transporter.
 
   
 0.716
Deba_0186
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ppd:Ppro_1462 transport system permease protein; PFAM: transport system permease protein; SPTR: A1AP08 Transport system permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.678
Deba_0184
KEGG: mta:Moth_1438 hypothetical protein; SPTR: Q2RIJ0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF364).
 
     0.628
Deba_0098
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: D1JG71 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.598
Deba_1186
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.505
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.465
Deba_0191
GCN5-related N-acetyltransferase; COGs: COG3153 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: dhd:Dhaf_2458 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C6ISG3 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.440
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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