STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0191GCN5-related N-acetyltransferase; COGs: COG3153 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: dhd:Dhaf_2458 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C6ISG3 Acetyltransferase; PFAM: Acetyltransferase (GNAT) family. (170 aa)    
Predicted Functional Partners:
Deba_0189
Radical SAM domain protein; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ppd:Ppro_1469 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: A1AP15 Radical SAM domain protein; PFAM: Periplasmic binding protein; Radical SAM superfamily.
       0.455
Deba_1308
GCN5-related N-acetyltransferase; InterPro IPR000182:IPR016181; KEGG: bth:BT_1258 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C0D719 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
 
  
 0.442
Deba_0190
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ppd:Ppro_1468 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: A1AP14 Methyltransferase type 11; PFAM: Methyltransferase domain.
       0.440
Deba_0096
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060:IPR009057:IPR018062; KEGG: gvi:glr0326 AraC family transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Q7NNT4 AraC family transcriptional regulatory protein.
  
     0.413
Deba_2837
InterPro IPR000835:IPR011991; KEGG: cac:CAC0559 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q97LK1 Transcriptional regulator, MarR/EmrR family; PFAM: MarR family.
  
     0.413
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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