STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0198UspA domain protein; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016:IPR006015:IPR014729; KEGG: rxy:Rxyl_0169 hypothetical protein; PFAM: UspA domain protein; SPTR: C6NV99 UspA domain protein; PFAM: Universal stress protein family. (151 aa)    
Predicted Functional Partners:
Deba_0183
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665:IPR006690:IPR006664; KEGG: nha:Nham_0236 OmpA/MotB; PFAM: OmpA/MotB domain protein; SPTR: Q1QRL1 OmpA/MotB; PFAM: OmpA family.
   
  
 0.691
Deba_3022
methylated-DNA/protein- cysteinemethyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR011991; KEGG: sgr:SGR_1200 putative methylated-DNA--protein-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B1VV45 Putative methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase.
  
  
 0.633
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
  
  
 0.560
Deba_0200
COGs: COG0668 Small-conductance mechanosensitive channel; InterPro IPR006685:IPR011066:IPR010920; KEGG: mbu:Mbur_2331 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: D1JF06 Putative mechanosensitive channel protein; PFAM: Mechanosensitive ion channel.
 
  
 0.557
Deba_0199
InterPro IPR001173; KEGG: dal:Dalk_2929 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8FBH5 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
       0.524
Deba_0202
Mammalian cell entry related domain protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399:IPR005829; KEGG: drt:Dret_0678 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: C8X0M3 Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
 
    0.469
Deba_0197
KEGG: amc:MADE_02511 hypothetical protein; SPTR: Q1NRQ0 Putative uncharacterized protein.
       0.452
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.449
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.440
rhlB
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
     
 0.404
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.