STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0209InterPro IPR000182:IPR016181; KEGG: dol:Dole_1891 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: B6B805 Histone deacetylase superfamily; PFAM: Acetyltransferase (GNAT) family. (164 aa)    
Predicted Functional Partners:
Deba_0210
COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; SPTR: A0LG59 D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase.
   
 0.990
Deba_0211
COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095:IPR011761:IPR013816; KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: A0LG58 D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase.
 
   
 0.942
Deba_0212
Lysine 2,3-aminomutase YodO family protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197:IPR003739; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: A0LG57 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein.
 
     0.891
Deba_0213
KEGG: dat:HRM2_13270 hypothetical protein; SPTR: C0Q8U8 Putative uncharacterized protein.
       0.504
Deba_0586
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: dol:Dole_1974 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; SPTR: A8ZT95 Histone deacetylase superfamily; PFAM: Histone deacetylase domain.
    
 0.469
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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