STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0226COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: dae:Dtox_0718 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8W1I7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1015). (450 aa)    
Predicted Functional Partners:
Deba_0227
COGs: COG4123 O-methyltransferase; InterPro IPR007848:IPR002052; KEGG: drt:Dret_0713 methyltransferase small; PFAM: methyltransferase small; SPTR: Q09D37 SAM-dependent methyltransferases; PFAM: Methyltransferase small domain; Belongs to the methyltransferase superfamily.
       0.795
Deba_1152
COGs: COG0069 Glutamate synthase domain 2; InterProIPR002489:IPR000583:IPR006982:IPR002932:IPR 013785:IPR017932; KEGG: ttr:Tter_0474 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: D1CEN9 Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
       0.470
Deba_0225
KEGG: dol:Dole_2869 hypothetical protein; SPTR: A8ZYE7 Putative uncharacterized protein.
       0.464
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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