STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0306ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter. (255 aa)    
Predicted Functional Partners:
Deba_0307
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 putative O-antigen export system permease protein; PFAM: ABC-2 type transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC-2 type transporter.
 
 
 0.996
Deba_3303
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein; PFAM: ABC-2 type transporter; SPTR: Q094Z0 O-antigen export system permease protein RfbA; PFAM: ABC-2 type transporter.
 
 
 0.986
Deba_3085
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: gur:Gura_2582 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: A5G4P2 Polysaccharide export protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
  
  
 0.793
Deba_2139
COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR001173; KEGG: kpu:KP1_0662 hypothetical protein; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C4X2L8 Putative uncharacterized protein; manually curated; PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2.
 
 
 0.643
Deba_1274
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ajs:Ajs_3540 ComF family protein; PFAM: phosphoribosyltransferase; SPTR: A1WBM8 ComF family protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
   
    0.621
Deba_1006
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein; PFAM: glycosyl transferase family 2; SPTR: Q748H9 Glycosyl transferase, group 1/2 family protein; PFAM: Glycosyl transferase family 2.
 
  
 0.611
Deba_0995
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mag:amb1074 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2W8E7 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
 
  
 0.593
Deba_1050
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_3119 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q1ARF2 Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
 
  
 0.559
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
     
 0.541
Deba_2251
Hypothetical protein; KEGG: gdj:Gdia_1815 glycosyl transferase family 2; SPTR: A9HGV1 Putative glycosyl transferase.
  
  
 0.533
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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