STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0311COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: sat:SYN_00217 ABC-type Fe3+-siderophore transport system, permease component; PFAM: transport system permease protein; SPTR: Q2LY04 ABC-type Fe3+-siderophore transport system, permease component; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (362 aa)    
Predicted Functional Partners:
Deba_0310
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: sat:SYN_00216 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q2LY12 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; PFAM: ABC transporter.
 
 
 0.990
Deba_0309
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: pca:Pcar_3056 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: periplasmic binding protein; SPTR: Q3A016 ABC-type Fe3+-hydroxamate transport system, periplasmic component; PFAM: Periplasmic binding protein.
 
 
 0.981
Deba_0185
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: sfu:Sfum_3704 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A0LPM2 ABC transporter related; PFAM: ABC transporter.
 
 
 0.951
Deba_2440
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR017871:IPR003593:IPR003439; KEGG: drt:Dret_0032 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C8WZ59 ABC transporter related protein; PFAM: ABC transporter.
 
 
 0.950
Deba_2474
ABC transporter related protein; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593:IPR020322:IPR003439; KEGG: ppd:Ppro_1258 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A1ANF9 ABC transporter related; PFAM: ABC transporter.
 
 
 0.950
Deba_2438
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dol:Dole_2060 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A8ZTT1 Periplasmic binding protein; PFAM: Periplasmic binding protein.
 
 
 0.946
Deba_0187
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: sfu:Sfum_3702 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: A0LPM0 Periplasmic binding protein; PFAM: Periplasmic binding protein.
 
 
 0.930
Deba_0189
Radical SAM domain protein; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197; KEGG: ppd:Ppro_1469 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SPTR: A1AP15 Radical SAM domain protein; PFAM: Periplasmic binding protein; Radical SAM superfamily.
  
 
 0.816
Deba_2472
Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dal:Dalk_4056 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: periplasmic binding protein; SPTR: B8FM08 ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein; PFAM: Periplasmic binding protein.
 
 
 0.815
Deba_0313
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1253 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1HNQ0 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
  
 0.808
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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