STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0321KEGG: dol:Dole_0574 hypothetical protein; SPTR: A8ZU72 Conserved hypothetical cytosolic protein. (93 aa)    
Predicted Functional Partners:
Deba_0323
Protein of unknown function DUF134; COGs: COG1342 DNA-binding protein; InterPro IPR002852; KEGG: rru:Rru_A1194 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: Q2RV50 UPF0251 protein Rru_A1194; PFAM: Protein of unknown function DUF134; Belongs to the UPF0251 family.
 
     0.714
Deba_0322
KEGG: hypothetical protein; SPTR: A0E9P2 Chromosome undetermined scaffold_85, whole genome shotgun sequence.
       0.620
Deba_2177
COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: dds:Ddes_1867 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Q5DUA6 Putative uncharacterized protein orp (Fragment); PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.501
Deba_0320
Two component, sigma54 specific, transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR001789:IPR002078:IPR002197:IPR011006:IPR 009057:IPR003593:IPR020441; KEGG: dol:Dole_2401 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis fam [...]
       0.500
Deba_2176
Cobyrinic acid ac-diamide synthase; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNT0 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; 4Fe-4S binding domain.
 
     0.487
Deba_2175
Cobyrinic acid ac-diamide synthase; COGs: COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain; InterPro IPR017896:IPR017900:IPR002586:IPR001450; KEGG: sfu:Sfum_3408 cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A0LNS9 Cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.453
Deba_2079
KEGG: dol:Dole_1913 GTP-binding protein; SPTR: A8ZSI0 Conserved hypothetical GTP-binding protein.
  
     0.449
Deba_0013
Protein of unknown function UPF0031; InterPro IPR000631; KEGG: dat:HRM2_44810 hypothetical protein; PFAM: protein of unknown function UPF0031; SPTR: C0QF36 Putative uncharacterized protein; PFAM: Carbohydrate kinase.
  
     0.435
Deba_2642
Protein of unknown function DUF89; COGs: COG1578 conserved hypothetical protein; InterPro IPR002791:IPR014444; KEGG: dau:Daud_1372 hypothetical protein; PFAM: protein of unknown function DUF89; SPTR: B1I472 Putative uncharacterized protein; PFAM: Protein of unknown function DUF89.
 
     0.417
Deba_0012
KEGG: dol:Dole_3247 hypothetical protein; SPTR: A9A0D1 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3343).
  
     0.414
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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