STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0333Protein of unknown function DUF1458; InterPro IPR009923; KEGG: jan:Jann_3624 hypothetical protein; PFAM: protein of unknown function DUF1458; SPTR: A4EEU5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458). (70 aa)    
Predicted Functional Partners:
Deba_0962
Protein of unknown function DUF500; COGs: COG2930 conserved hypothetical protein; InterPro IPR007461; KEGG: xac:XAC4219 hypothetical protein; PFAM: protein of unknown function DUF500; SPTR: Q8PEX1 Putative uncharacterized protein; PFAM: Family of unknown function (DUF500).
  
    0.679
Deba_0334
Methyltransferase small; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR007848; KEGG: dal:Dalk_1101 ribosomal L11 methyltransferase; PFAM: methyltransferase small; SPTR: B8F958 Ribosomal L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase.
       0.581
Deba_0483
AsmA family protein; InterPro IPR007844:IPR016160; KEGG: noc:Noc_2265 hypothetical protein; PFAM: AsmA family protein; SPTR: Q3J8X3 Putative uncharacterized protein; PFAM: AsmA family.
   
    0.514
Deba_0332
KEGG: dol:Dole_0798 hypothetical protein; SPTR: A8ZVE7 Putative uncharacterized protein.
       0.482
Deba_0841
Transport-associated protein; COGs: COG1102 Cytidylate kinase; InterPro IPR007055; KEGG: gbm:Gbem_2312 transport-associated; PFAM: transport-associated; SPTR: C6MT75 Transport-associated protein; PFAM: Putative phospholipid-binding domain.
  
    0.468
aroK-2
Shikimate kinase., 3-dehydroquinate synthase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.435
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.