STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0380Protein of unknown function UPF0052 and CofD; COGs: COG0391 conserved hypothetical protein; InterPro IPR002882; KEGG: dma:DMR_20270 hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; SPTR: C4XRH3 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0052; TIGRFAM: conserved hypothetical protein, cofD-related. (399 aa)    
Predicted Functional Partners:
Deba_0381
HPr kinase; KEGG: dma:DMR_18060 hypothetical protein; SPTR: C4XQD2 Putative uncharacterized protein.
 
  
 0.950
Deba_0383
COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170:IPR002575:IPR011009; KEGG: dma:DMR_33380 hypothetical protein; PFAM: PhoU family protein; aminoglycoside phosphotransferase; SPTR: C4XK89 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF227); PhoU domain.
 
     0.943
Deba_0382
RimK domain protein ATP-grasp; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR011761; KEGG: dba:Dbac_2700 RimK domain protein ATP-grasp; PFAM: RimK domain protein ATP-grasp; SPTR: C7LTL0 RimK domain protein ATP-grasp; PFAM: RimK-like ATP-grasp domain.
 
   
 0.940
Deba_0384
KEGG: tcx:Tcr_1766 hypothetical protein; SPTR: A6GK59 Putative uncharacterized protein.
 
     0.926
Deba_0385
KEGG: dma:DMR_33400 hypothetical protein; SPTR: C4XK91 Putative uncharacterized protein.
 
     0.906
Deba_1964
Conserved hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.844
Deba_0379
KEGG: drt:Dret_1987 hypothetical protein; SPTR: C8X4P8 Putative uncharacterized protein.
       0.692
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
 
   0.685
Deba_2411
COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: scl:sce3096 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: A9GIE5 Phosphoprotein phosphatase; PFAM: Protein phosphatase 2C.
   
  
 0.673
Deba_0378
KEGG: dba:Dbac_2704 hypothetical protein; SPTR: C7LTL4 Putative uncharacterized protein.
       0.639
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.