STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0398KEGG: dvl:Dvul_1182 hypothetical protein; SPTR: A1VCN6 Putative uncharacterized protein. (348 aa)    
Predicted Functional Partners:
Deba_0188
COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: ppd:Ppro_1470 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A1AP16 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: outer membrane autotransporter barrel domain.
  
     0.516
Deba_0399
Hypothetical protein; KEGG: hba:Hbal_2364 glycosyl transferase family 39; SPTR: C6XNA0 Glycosyl transferase family 39.
       0.487
Deba_1781
KEGG: dvu:DVU0040 hypothetical protein; SPTR: Q72G21 Putative uncharacterized protein.
  
     0.486
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.