STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0406Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_0098 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: B8FKJ3 Methyltransferase type 11; PFAM: Methyltransferase domain. (268 aa)    
Predicted Functional Partners:
htpX
Peptidase M48 Ste24p; COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: glo:Glov_0554 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: B3E370 Peptidase M48 Ste24p; PFAM: Peptidase family M48; Belongs to the peptidase M48B family.
       0.693
Deba_0408
Peptidase S1 and S6 chymotrypsin/Hap; COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR009003:IPR001940; KEGG: dde:Dde_3776 PDZ/DHR/GLGF; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q30US8 PDZ/DHR/GLGF; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family.
       0.685
Deba_0405
Cyclase family protein; COGs: COG1878 metal-dependent hydrolase; InterPro IPR007325:IPR000169; KEGG: dal:Dalk_1541 cyclase family protein; PFAM: cyclase family protein; SPTR: B8FAE3 Cyclase family protein; PFAM: Putative cyclase.
       0.551
Deba_1122
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: D1JGD8 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.478
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.465
Deba_2164
Methyltransferase type 11; COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013216; KEGG: ppd:Ppro_0039 ArsR family transcriptional regulator; PFAM: Methyltransferase type 11; SPTR: B0VEV0 Putative 3-demethylubiquinone-9 3-O-methyltransferase; PFAM: Methyltransferase domain.
 
 
 0.429
Deba_0343
COGs: COG3527 Alpha-acetolactate decarboxylase; InterPro IPR005128; KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase; PRIAM: Acetolactate decarboxylase; SPTR: Q1JWS4 Acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase.
  
     0.404
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.