STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0415Peptidoglycan-binding lysin domain protein; InterPro IPR018392:IPR002482; KEGG: mpt:Mpe_A2160 putative transmembrane protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: A2SHS7 Putative transmembrane protein; PFAM: LysM domain. (254 aa)    
Predicted Functional Partners:
Deba_0414
Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR007160:IPR001450:IPR017896:IPR017900; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1TQG7 Uncharacterized conserved protein; PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362).
       0.768
Deba_3032
KEGG: ter:Tery_1189 hypothetical protein; SPTR: Q116M7 Putative uncharacterized protein.
 
   
 0.544
Deba_0416
Histidine kinase; COGs: COG1639 signal transduction protein; InterPro IPR013976:IPR003661:IPR003594:IPR005467; KEGG: aeh:Mlg_1873 diguanylate cyclase; PFAM: Metal-dependent hydrolase HDOD; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: Q0A7H0 Diguanylate cyclase; PFAM: HDOD domain; His Kinase A (phosphoacceptor) domain.
       0.525
Deba_2343
KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein.
  
     0.523
Deba_2689
Hypothetical protein; InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.521
Deba_2068
KEGG: dsa:Desal_1340 hypothetical protein; SPTR: C6C206 Putative uncharacterized protein; manually curated.
   
 
 0.518
Deba_3268
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: scl:sce0105 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: A9GLE4 Putative uncharacterized protein; PFAM: Pentapeptide repeats (8 copies).
   
 
 0.518
Deba_0588
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A7NFW7 Tetratricopeptide TPR_2 repeat protein.
 
     0.508
Deba_3246
KEGG: rca:Rcas_3345 hypothetical protein; SPTR: A7NP99 Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.508
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.503
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.