STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0432Hypothetical protein; KEGG: hoh:Hoch_5429 TonB-dependent receptor; SPTR: C1WWS0 2-oxoglutarate dehydrogenase E2 component. (65 aa)    
Predicted Functional Partners:
Deba_0433
Pyruvate carboxyltransferase; COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891:IPR013785; KEGG: cag:Cagg_1303 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: B8G8E9 Pyruvate carboxyltransferase; PFAM: HMGL-like.
       0.488
Deba_0434
Nitrogenase cofactor biosynthesis protein NifB; COGs: COG0535 Fe-S oxidoreductase; InterProIPR007197:IPR003731:IPR006638:IPR013785:IPR 005980; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8QZK3 Nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
       0.468
Deba_0435
Nitrogenase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR000318; KEGG: dma:DMR_17510 nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C4XQ77 Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase component 1 type Oxidoreductase; Belongs to the NifD/NifK/NifE/NifN family.
       0.456
Deba_0436
Nitrogenase MoFe cofactor biosynthesis protein NifE; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005973:IPR000318; KEGG: dba:Dbac_0841 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; SPTR: C7LPB6 Nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
       0.456
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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