STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0452COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mba:Mbar_A0373 hexosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q46FI5 Hexosyltransferase; PFAM: Glycosyl transferases group 1. (784 aa)    
Predicted Functional Partners:
Deba_0453
Methyltransferase type 11; InterPro IPR013216; KEGG: mac:MA1178 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q8TRJ7 Putative uncharacterized protein; PFAM: Methyltransferase domain.
 
   
 0.935
Deba_0454
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter.
 
 
 0.891
Deba_0451
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D1C274 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
 
    
0.847
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
  
 0.836
Deba_0450
Hypothetical protein; KEGG: dra:DR_2413 chromate transport protein; SPTR: A4TWU0 Putative uncharacterized protein.
       0.788
Deba_2689
Hypothetical protein; InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
  
 0.774
Deba_2343
KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein.
 
    0.742
Deba_3246
KEGG: rca:Rcas_3345 hypothetical protein; SPTR: A7NP99 Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
   
 0.740
Deba_1295
COGs: COG2378 transcriptional regulator protein; KEGG: sat:SYN_02988 transcriptional regulator; SPTR: Q2LX17 Transcriptional regulator.
  
     0.737
Deba_2081
O-antigen polymerase; InterPro IPR018271:IPR007016; KEGG: tye:THEYE_A0427 O-antigen polymerase family; PFAM: O-antigen polymerase; SPTR: B5YJ59 O-Antigen Polymerase family; PFAM: O-Antigen ligase.
 
  
 0.725
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.