STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0454ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter. (414 aa)    
Predicted Functional Partners:
Deba_3303
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein; PFAM: ABC-2 type transporter; SPTR: Q094Z0 O-antigen export system permease protein RfbA; PFAM: ABC-2 type transporter.
 
 0.997
Deba_0307
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 putative O-antigen export system permease protein; PFAM: ABC-2 type transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC-2 type transporter.
 
 
 0.974
Deba_0453
Methyltransferase type 11; InterPro IPR013216; KEGG: mac:MA1178 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q8TRJ7 Putative uncharacterized protein; PFAM: Methyltransferase domain.
 
   
 0.918
Deba_0452
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mba:Mbar_A0373 hexosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Q46FI5 Hexosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.891
Deba_0451
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D1C274 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
 
 
 0.885
Deba_3085
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: gur:Gura_2582 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: A5G4P2 Polysaccharide export protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
  
  
 0.793
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
   
 0.788
Deba_0450
Hypothetical protein; KEGG: dra:DR_2413 chromate transport protein; SPTR: A4TWU0 Putative uncharacterized protein.
       0.781
Deba_2139
COGs: COG0438 Glycosyltransferase; InterPro IPR001296:IPR001173; KEGG: kpu:KP1_0662 hypothetical protein; PFAM: glycosyl transferase family 2; glycosyl transferase group 1; SPTR: C4X2L8 Putative uncharacterized protein; manually curated; PFAM: Glycosyl transferases group 1; Glycosyl transferase family 2.
 
 
 0.646
Deba_1274
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ajs:Ajs_3540 ComF family protein; PFAM: phosphoribosyltransferase; SPTR: A1WBM8 ComF family protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
   
    0.621
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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