Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_0499SagB-type dehydrogenase domain protein; InterPro IPR000415:IPR020051; KEGG: dol:Dole_2124 hypothetical protein; PFAM: nitroreductase; SPTR: A8ZTZ5 Putative uncharacterized protein; TIGRFAM: SagB-type dehydrogenase domain; PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain. (480 aa)    
Predicted Functional Partners:
Deba_0500
Hypothetical protein; KEGG: lbf:LBF_4045 transglycosylase; SPTR: B0STQ0 Putative soluble lytic murein transglycosylase; putative SLT domain.
       0.773
Deba_0502
4-alpha-glucanotransferase; COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterProIPR004300:IPR015178:IPR015179:IPR011330:IPR 011013:IPR000602; KEGG: rba:RB2160 alpha-amylase; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Q7UWA6 Alpha-amylase; PFAM: Domain of unknown function (DUF1925); Glycosyl hydrolase family 57; Domain of unknown function (DUF1926).
 
     0.543
Deba_0501
Glycoside hydrolase family 57; COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300:IPR011330; KEGG: tro:trd_1935 glycosyl hydrolase, family 57; PFAM: glycoside hydrolase family 57; SPTR: B9L234 Glycosyl hydrolase, family 57; PFAM: Glycosyl hydrolase family 57; Domain of unknown function (DUF3536).
       0.542
rplQ
COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: dps:DP1153 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: Q6AP42 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
   0.531
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.514
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.509
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.504
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.503
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.502
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.497
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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