STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0512Type IV pilus assembly PilZ; InterPro IPR009875; KEGG: sat:SYN_02698 putative cytoplasmic protein; PFAM: type IV pilus assembly PilZ; SPTR: Q2LWK0 Hypothetical cytosolic protein; PFAM: PilZ domain. (262 aa)    
Predicted Functional Partners:
Deba_0511
Protein of unknown function YGGT; InterPro IPR003425; KEGG: pmx:PERMA_1227 YGGT family protein; PFAM: protein of unknown function YGGT; SPTR: A6DA20 YGGT family protein; PFAM: YGGT family.
       0.541
Deba_0513
Hypothetical protein; InterPro IPR019734:IPR013026; KEGG: hypothetical protein; SPTR: A0FJY8 Type I fatty acid synthase.
       0.468
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.