STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0513Hypothetical protein; InterPro IPR019734:IPR013026; KEGG: hypothetical protein; SPTR: A0FJY8 Type I fatty acid synthase. (139 aa)    
Predicted Functional Partners:
Deba_0514
Rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dat:HRM2_03660 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: C0QGL1 Putative uncharacterized protein; PFAM: Rhodanese-like domain.
       0.559
Deba_0512
Type IV pilus assembly PilZ; InterPro IPR009875; KEGG: sat:SYN_02698 putative cytoplasmic protein; PFAM: type IV pilus assembly PilZ; SPTR: Q2LWK0 Hypothetical cytosolic protein; PFAM: PilZ domain.
       0.468
Deba_0515
Hydroxypyruvate reductase; COGs: COG2379 Putative glycerate kinase; InterPro IPR007835; KEGG: sus:Acid_0778 glycerate 2-kinase; PFAM: MOFRL domain protein; PRIAM: Hydroxypyruvate reductase; SPTR: Q02AY9 Glycerate 2-kinase; PFAM: MOFRL family.
       0.401
Deba_0516
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439:IPR013563:IPR003593:IPR010066:IPR 017871; KEGG: gau:GAU_0758 putative peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: C1A6E0 Putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; [...]
       0.401
Deba_0517
Oligopeptide/dipeptide ABC transporter, ATPase subunit; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterProIPR003439:IPR013563:IPR002696:IPR003593:IPR 010066:IPR017871; KEGG: sro:Sros_5910 peptide ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: B5GVG5 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belong [...]
       0.401
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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