STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0543KEGG: dsa:Desal_0113 hypothetical protein; SPTR: C6BVH0 Putative uncharacterized protein. (105 aa)    
Predicted Functional Partners:
Deba_0544
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
     0.911
Deba_0542
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dal:Dalk_2736 hypothetical protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: B8FKQ6 Putative uncharacterized protein; PFAM: Nickel uptake substrate-specific transmembrane region.
 
     0.887
Deba_0545
FeoA family protein; COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167:IPR008988; KEGG: dds:Ddes_0645 FeoA family protein; PFAM: FeoA family protein; SPTR: B8IYF8 FeoA family protein; PFAM: FeoA domain.
 
     0.848
Deba_0550
KEGG: dde:Dde_0493 hypothetical protein; SPTR: C1SFS4 Putative uncharacterized protein.
 
     0.766
Deba_0474
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR011662:IPR012910:IPR000531:IPR010917; KEGG: wsu:WS1416 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; SPTR: Q7MRE4 HUGA; PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain.
 
     0.664
Deba_2681
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: dat:HRM2_23190 CbiP; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: C0QES2 CbiP; PFAM: Nickel uptake substrate-specific transmembrane region.
 
     0.625
Deba_1260
KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein.
 
     0.576
Deba_2680
KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3573).
 
     0.556
Deba_1682
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
  
     0.490
Deba_0546
Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR000695:IPR 006416:IPR018303:IPR000150; KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Q315V6 Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPa [...]
 
     0.488
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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