STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0549KEGG: dsa:Desal_0107 hypothetical protein; SPTR: C1SFS5 Putative uncharacterized protein. (146 aa)    
Predicted Functional Partners:
Deba_0548
KEGG: dde:Dde_0491 hypothetical protein; SPTR: Q315V4 Putative uncharacterized protein.
       0.794
Deba_0550
KEGG: dde:Dde_0493 hypothetical protein; SPTR: C1SFS4 Putative uncharacterized protein.
       0.790
Deba_0547
KEGG: dde:Dde_0490 hypothetical protein; SPTR: Q315V5 Putative uncharacterized protein.
       0.781
Deba_0546
Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR000695:IPR 006416:IPR018303:IPR000150; KEGG: dde:Dde_0489 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Q315V6 Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPa [...]
       0.655
Deba_0553
FeoA family protein; InterPro IPR007167; KEGG: dsa:Desal_0100 FeoA family protein; PFAM: FeoA family protein; SPTR: C6BV34 FeoA family protein; PFAM: FeoA domain.
       0.625
Deba_0551
KEGG: rru:Rru_A1028 hypothetical protein; SPTR: Q2RVL6 Putative uncharacterized protein.
       0.619
Deba_0552
Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR008250:IPR005834:IPR001757:IPR006416:IPR 018303:IPR000150; KEGG: dde:Dde_0495 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Q315V0 Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type [...]
       0.588
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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